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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gaa BES Leukotriene A(4) hydrolase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gaa BESLeukotriene A(4) hydrolase / 1.136
3fuh BESLeukotriene A-4 hydrolase 3.3.2.6 1.027
3fuf BESLeukotriene A-4 hydrolase 3.3.2.6 0.979
3ftx BESLeukotriene A-4 hydrolase 3.3.2.6 0.936
2hpt BESAminopeptidase N 3.4.11.2 0.849
2dqm BESAminopeptidase N 3.4.11.2 0.848
2xq0 BESLeukotriene A-4 hydrolase homolog 3.3.2.6 0.838
3q43 D66M1 family aminopeptidase 3.4.11 0.800
2yd0 BESEndoplasmic reticulum aminopeptidase 1 3.4.11 0.786
4fkk BESAminopeptidase N 3.4.11.2 0.785
3q44 D50M1 family aminopeptidase 3.4.11 0.783
4xmx BESAminopeptidase N 3.4.11.2 0.751
2r59 PH0Leukotriene A-4 hydrolase 3.3.2.6 0.750
1pwu GM6Lethal factor 3.4.24.83 0.665
4zla BESCytosol aminopeptidase 3.4.11.1 0.657
3h8g BESCytosol aminopeptidase 3.4.11.1 0.653
3chs 4BULeukotriene A-4 hydrolase 3.3.2.6 0.650