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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4g9l NGH Stromelysin-1 3.4.24.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4g9l NGHStromelysin-1 3.4.24.17 0.982
3oho Z79Stromelysin-1 3.4.24.17 0.859
1d8m BBHStromelysin-1 3.4.24.17 0.845
2w0d CGSMacrophage metalloelastase 3.4.24.65 0.809
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.799
1d8f SPIStromelysin-1 3.4.24.17 0.759
1bqo N25Stromelysin-1 3.4.24.17 0.754
4h76 10BMacrophage metalloelastase 3.4.24.65 0.751
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1d7x SPCStromelysin-1 3.4.24.17 0.735
4dpe NGHStromelysin-1 3.4.24.17 0.721
2ovx 4MRMatrix metalloproteinase-9 3.4.24.35 0.699
1q3a NGHStromelysin-2 3.4.24.22 0.688
1you PFDCollagenase 3 3.4.24 0.683
1bzs BSINeutrophil collagenase 3.4.24.34 0.682
1g05 BBHStromelysin-1 3.4.24.17 0.680
1zxc IH6Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.679
3o2x 3O2Collagenase 3 3.4.24 0.679
1g49 111Stromelysin-1 3.4.24.17 0.674
2yig 5ELCollagenase 3 3.4.24 0.673
1mnc PLHNeutrophil collagenase 3.4.24.34 0.671
3zxh E41Collagenase 3 3.4.24 0.671
4h49 L29Macrophage metalloelastase 3.4.24.65 0.671
2i47 KGYDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.670
4ja1 NGHStromelysin-1 3.4.24.17 0.669
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.666
4h1q 0XXMatrix metalloproteinase-9 3.4.24.35 0.666
1atl 0QISnake venom metalloproteinase atrolysin-D 3.4.24.42 0.653
1d5j MM3Stromelysin-1 3.4.24.17 0.653
2woa 576Macrophage metalloelastase 3.4.24.65 0.653
1caq DPSStromelysin-1 3.4.24.17 0.650