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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4g21 0VP Vitamin D3 receptor A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4g21 0VPVitamin D3 receptor A / 1.563
4g1z 0VPVitamin D3 receptor A / 1.367
4g20 484Vitamin D3 receptor A / 1.272
4g1d 0VKVitamin D3 receptor A / 1.264
4g1y 0VOVitamin D3 receptor A / 0.823
3dr1 C5DVitamin D3 receptor A / 0.739
3w5t LHPVitamin D3 receptor / 0.710
3w0j T08Vitamin D3 receptor / 0.686
3vtd TKDVitamin D3 receptor / 0.674
1pq9 44BOxysterols receptor LXR-beta / 0.662
4rup H97Vitamin D3 receptor A / 0.655