sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4g0n | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4g0n | GNP | GTPase HRas | / | 1.328 | |
| 3k8y | GNP | GTPase HRas | / | 1.210 | |
| 3i3s | GNP | GTPase HRas | / | 1.205 | |
| 3rs5 | GNP | GTPase HRas | / | 1.204 | |
| 3rs7 | GNP | GTPase HRas | / | 1.204 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.192 | |
| 3rs4 | GNP | GTPase HRas | / | 1.190 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.186 | |
| 3rsl | GNP | GTPase HRas | / | 1.179 | |
| 3rs0 | GNP | GTPase HRas | / | 1.175 | |
| 3lbi | GNP | GTPase HRas | / | 1.158 | |
| 3lbh | GNP | GTPase HRas | / | 1.155 | |
| 4nyj | GNP | GTPase HRas | / | 1.155 | |
| 3oiw | GNP | GTPase HRas | / | 1.149 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.149 | |
| 4l9w | GNP | GTPase HRas | / | 1.148 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.145 | |
| 3ddc | GNP | GTPase HRas | / | 1.138 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.131 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.129 | |
| 3lbn | GNP | GTPase HRas | / | 1.128 | |
| 4k81 | GTP | GTPase HRas | / | 1.128 | |
| 2rge | GNP | GTPase HRas | / | 1.126 | |
| 4dlt | GNP | GTPase HRas | / | 1.122 | |
| 4dlw | GNP | GTPase HRas | / | 1.120 | |
| 2rgc | GNP | GTPase HRas | / | 1.119 | |
| 4dsn | GCP | GTPase KRas | / | 1.115 | |
| 3l8y | GNP | GTPase HRas | / | 1.113 | |
| 4dlx | GNP | GTPase HRas | / | 1.109 | |
| 3oiv | GNP | GTPase HRas | / | 1.108 | |
| 4dlz | GNP | GTPase HRas | / | 1.105 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.104 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.103 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.102 | |
| 2c5l | GTP | GTPase HRas | / | 1.095 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.092 | |
| 4dlv | GNP | GTPase HRas | / | 1.084 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.079 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.077 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.071 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.065 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 1.062 | |
| 3tgp | GNP | GTPase HRas | / | 1.060 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.057 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.054 | |
| 3k9l | GNP | GTPase HRas | / | 1.051 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.050 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.050 | |
| 4xvr | GNP | GTPase HRas | / | 1.045 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 1.044 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 1.043 | |
| 2rgg | GNP | GTPase HRas | / | 1.040 | |
| 3oiu | GNP | GTPase HRas | / | 1.038 | |
| 4nyi | GNP | GTPase HRas | / | 1.037 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 1.034 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 1.030 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.029 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 1.029 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.028 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.027 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.025 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.023 | |
| 3v4f | GNP | GTPase HRas | / | 1.021 | |
| 4xvq | GNP | GTPase HRas | / | 1.020 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 1.016 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 1.014 | |
| 5b2z | GNP | GTPase HRas | / | 1.014 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.009 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 1.006 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.005 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.004 | |
| 4xoi | GTP | Transforming protein RhoA | / | 1.004 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.002 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.001 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.001 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.999 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.991 | |
| 4wa7 | GDP | GTPase KRas | / | 0.979 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.978 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.976 | |
| 4q03 | GDP | GTPase KRas | / | 0.976 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.974 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.974 | |
| 4ql3 | GDP | GTPase KRas | / | 0.974 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.972 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.971 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.970 | |
| 2rgb | GNP | GTPase HRas | / | 0.967 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.965 | |
| 4l9s | GDP | GTPase HRas | / | 0.964 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.964 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.962 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.961 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.959 | |
| 4q02 | GDP | GTPase KRas | / | 0.959 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.955 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.954 | |
| 4epw | GDP | GTPase KRas | / | 0.954 | |
| 4epx | GDP | GTPase KRas | / | 0.954 | |
| 3kud | GDP | GTPase HRas | / | 0.953 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.953 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.952 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.949 | |
| 4lrw | GDP | GTPase KRas | / | 0.947 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.946 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.946 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.946 | |
| 2ce2 | GDP | GTPase HRas | / | 0.945 | |
| 4mit | GTP | Rho-related protein racC | / | 0.945 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.944 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.944 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.939 | |
| 4dls | GNP | GTPase HRas | / | 0.938 | |
| 4dsu | GDP | GTPase KRas | / | 0.938 | |
| 4tq9 | GDP | GTPase KRas | / | 0.938 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.937 | |
| 1lfd | GNP | GTPase HRas | / | 0.935 | |
| 4dso | GSP | GTPase KRas | / | 0.933 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.932 | |
| 4l8g | GDP | GTPase KRas | / | 0.931 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.927 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.927 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.925 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.924 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.920 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.920 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.919 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.918 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.914 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.913 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.913 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.910 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.909 | |
| 4lv6 | GDP | GTPase KRas | / | 0.907 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.906 | |
| 4lpk | GDP | GTPase KRas | / | 0.906 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.906 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.903 | |
| 2cl6 | CAG | GTPase HRas | / | 0.901 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.900 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.898 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.897 | |
| 3r9x | GNP | GTPase Era | / | 0.897 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.894 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.893 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.893 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.891 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.890 | |
| 4obe | GDP | GTPase KRas | / | 0.889 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.888 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.888 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.887 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.887 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.887 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.886 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.886 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.884 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.884 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.882 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.881 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.876 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.872 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.870 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.869 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.869 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.867 | |
| 4luc | GDP | GTPase KRas | / | 0.865 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.863 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.860 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.859 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.858 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.858 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.857 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.856 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.856 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.854 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.854 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.852 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.852 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.852 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.850 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.849 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.848 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.846 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.845 | |
| 3ref | GDP | Rho family GTPase | / | 0.845 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.845 | |
| 3ftq | GNP | Septin-2 | / | 0.843 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.841 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.841 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.837 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.836 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.834 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.833 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.831 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.828 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.828 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.828 | |
| 4dvg | GSP | Rho family GTPase | / | 0.827 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.826 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.825 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.824 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.824 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.823 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.819 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.819 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.819 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.818 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.817 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.817 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.816 | |
| 2rgx | AP5 | Adenylate kinase | / | 0.815 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.814 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.813 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.813 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.811 | |
| 5bn3 | ADP | NEQ263 | / | 0.811 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.810 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.809 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.807 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.806 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.806 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.806 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.806 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.805 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.805 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.804 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.804 | |
| 4ldj | GDP | GTPase KRas | / | 0.803 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.801 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.799 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.799 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.799 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.798 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.797 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.796 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.796 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.796 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.795 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.791 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.791 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.790 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.790 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.789 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.788 | |
| 2fna | ADP | Uncharacterized protein | / | 0.786 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.786 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.785 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.784 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.784 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.784 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.784 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.784 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.784 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.783 | |
| 1ank | ANP | Adenylate kinase | / | 0.782 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.782 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.781 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.781 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.779 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.779 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.778 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.776 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.774 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.774 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.772 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.772 | |
| 4yqf | GDP | Septin-9 | / | 0.772 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.771 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.771 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.771 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.768 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.768 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.767 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.767 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.767 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.766 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.766 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.765 | |
| 4jlo | ADP | Adenylate kinase | / | 0.765 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.764 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.764 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.764 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.764 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.764 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.762 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.762 | |
| 5cyo | GDP | Septin-9 | / | 0.762 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.761 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.760 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.760 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.760 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.760 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.759 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.759 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.758 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.758 | |
| 1ake | AP5 | Adenylate kinase | / | 0.757 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.756 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.755 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.754 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.754 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.754 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.752 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.751 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.751 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.751 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.751 | |
| 1xmv | ADP | Protein RecA | / | 0.750 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.750 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.749 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.749 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.748 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.748 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.748 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.747 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.747 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.747 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.746 | |
| 4jld | ADP | Adenylate kinase | / | 0.746 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.745 | |
| 4v02 | ATP | Site-determining protein | / | 0.745 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.744 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.744 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.744 | |
| 1p3j | AP5 | Adenylate kinase | / | 0.743 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.743 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.742 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.741 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.741 | |
| 2zts | ADP | Uncharacterized protein | / | 0.740 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.740 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.739 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.739 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.738 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.737 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.736 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.736 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.736 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.736 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.736 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.735 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.734 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.733 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.732 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.732 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.731 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.730 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.730 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.729 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.729 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.729 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.728 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.725 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.724 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.724 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.722 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.722 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.722 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.721 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.720 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.720 | |
| 4iei | ADP | Gene 2 protein | / | 0.720 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.719 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.719 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.719 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.719 | |
| 4fid | GDP | G protein alpha subunit, putative | / | 0.719 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.719 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.718 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.717 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.717 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.717 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.717 | |
| 4db1 | ANP | Myosin-7 | / | 0.717 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.716 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.715 | |
| 4c30 | ANP | DNA helicase | / | 0.715 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.714 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.714 | |
| 1l2t | ATP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.713 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.713 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.713 | |
| 5ftc | ADP | TPR domain protein | / | 0.713 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.712 | |
| 2zrj | AGS | Protein RecA | / | 0.712 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.712 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.712 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.711 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.711 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.711 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.711 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.711 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.711 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.710 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.709 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.708 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.707 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.706 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.706 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.706 | |
| 4tyq | AP5 | Adenylate kinase | / | 0.706 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.705 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.705 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.704 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.704 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.704 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.703 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.703 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.702 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.702 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.702 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.701 | |
| 1um8 | ADP | ATP-dependent Clp protease ATP-binding subunit ClpX | / | 0.701 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.701 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.700 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.698 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.698 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.697 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.697 | |
| 1xms | ANP | Protein RecA | / | 0.696 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.696 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.694 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.694 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.693 | |
| 3dl0 | AP5 | Adenylate kinase | / | 0.693 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.693 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.692 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.692 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.691 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.690 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.689 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.689 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.687 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.687 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.686 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.686 | |
| 5cyp | GSP | Septin-9 | / | 0.686 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.685 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.685 | |
| 3uk6 | ADP | RuvB-like 2 | 3.6.4.12 | 0.685 | |
| 5dac | AGS | Uncharacterized protein | / | 0.684 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.683 | |
| 2ad5 | ADP | CTP synthase | / | 0.682 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.682 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.681 | |
| 1e32 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.679 | |
| 1nly | AGS | Cag alpha | / | 0.679 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.678 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.677 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.676 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.676 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.675 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.675 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.674 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.674 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.673 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.673 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.672 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.672 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.671 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.671 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.671 | |
| 2eck | ADP | Adenylate kinase | / | 0.670 | |
| 1j7k | ATP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.669 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.669 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.669 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.668 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.668 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.667 | |
| 2x0q | ATP | Alcaligin biosynthesis protein | / | 0.666 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.666 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.665 | |
| 2v3w | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.663 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.662 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.662 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.662 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.659 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.656 | |
| 4e2x | TYD | Methyltransferase | / | 0.656 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA2 | 3.6.3 | 0.655 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA1 | / | 0.655 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.654 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.654 | |
| 1ah4 | NAP | Aldose reductase | 1.1.1.21 | 0.652 | |
| 1je1 | GMP | Purine nucleoside phosphorylase | / | 0.652 | |
| 1nbm | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.652 | |
| 1php | ADP | Phosphoglycerate kinase | 2.7.2.3 | 0.652 | |
| 4ceg | ADP | Aurora kinase A | 2.7.11.1 | 0.651 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.650 |