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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fui UI3 Urokinase-type plasminogen activator 3.4.21.73

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fui UI3Urokinase-type plasminogen activator 3.4.21.73 0.964
1sqt UI3Urokinase-type plasminogen activator 3.4.21.73 0.899
4fuf 8UPUrokinase-type plasminogen activator 3.4.21.73 0.861
4fub 4UPUrokinase-type plasminogen activator 3.4.21.73 0.806
4fuj 1U9Urokinase-type plasminogen activator 3.4.21.73 0.802
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.789
1owe 675Urokinase-type plasminogen activator 3.4.21.73 0.787
4fue 7UPUrokinase-type plasminogen activator 3.4.21.73 0.774
1u6q 745Urokinase-type plasminogen activator 3.4.21.73 0.752
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.750
1owd 497Urokinase-type plasminogen activator 3.4.21.73 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.727
1ghv 120Prothrombin 3.4.21.5 0.713
1zsk 421Coagulation factor XI 3.4.21.27 0.711
3v0x ANHCationic trypsin 3.4.21.4 0.703
1owi 426Urokinase-type plasminogen activator 3.4.21.73 0.697
2ziq 26UProthrombin 3.4.21.5 0.680
2cf9 348Prothrombin 3.4.21.5 0.678
4e7r 0NWProthrombin 3.4.21.5 0.675
1o5g CR9Prothrombin 3.4.21.5 0.674
1ejn AGBUrokinase-type plasminogen activator 3.4.21.73 0.668
3plp BBACationic trypsin 3.4.21.4 0.666
4joo 1M4Beta-secretase 1 3.4.23.46 0.663
1owk 303Urokinase-type plasminogen activator 3.4.21.73 0.661
4jpe 1M7Beta-secretase 1 3.4.23.46 0.661
4e5f 0N7Polymerase acidic protein / 0.660
1gj5 130Prothrombin 3.4.21.5 0.654