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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fue 7UP Urokinase-type plasminogen activator 3.4.21.73

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fue 7UPUrokinase-type plasminogen activator 3.4.21.73 0.940
4fub 4UPUrokinase-type plasminogen activator 3.4.21.73 0.829
1owd 497Urokinase-type plasminogen activator 3.4.21.73 0.825
4fuj 1U9Urokinase-type plasminogen activator 3.4.21.73 0.812
1owe 675Urokinase-type plasminogen activator 3.4.21.73 0.807
1u6q 745Urokinase-type plasminogen activator 3.4.21.73 0.793
1sqt UI3Urokinase-type plasminogen activator 3.4.21.73 0.791
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.791
4fui UI3Urokinase-type plasminogen activator 3.4.21.73 0.774
4fuf 8UPUrokinase-type plasminogen activator 3.4.21.73 0.770
1owk 303Urokinase-type plasminogen activator 3.4.21.73 0.737
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.736
4baq M4ZProthrombin 3.4.21.5 0.719
1zsk 421Coagulation factor XI 3.4.21.27 0.715
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.710
1owi 426Urokinase-type plasminogen activator 3.4.21.73 0.705
1ype UIPProthrombin 3.4.21.5 0.696
1ghv 120Prothrombin 3.4.21.5 0.695
2viv VG2Urokinase-type plasminogen activator 3.4.21.73 0.693
1o5g CR9Prothrombin 3.4.21.5 0.691
2cf8 ESHProthrombin 3.4.21.5 0.691
2znk 31UProthrombin 3.4.21.5 0.691
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.687
3v0x ANHCationic trypsin 3.4.21.4 0.680
2zg0 50UProthrombin 3.4.21.5 0.678
1wtg 3BPCoagulation factor VII 3.4.21.21 0.677
2zhe 13UProthrombin 3.4.21.5 0.672
2cn0 F25Prothrombin 3.4.21.5 0.665
4e7r 0NWProthrombin 3.4.21.5 0.662
2bdy UNBProthrombin 3.4.21.5 0.660
2zfq 45UProthrombin 3.4.21.5 0.660
2c4f GILCoagulation factor VII 3.4.21.21 0.659
2bok 784Coagulation factor X 3.4.21.6 0.656