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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fud 6UP Urokinase-type plasminogen activator 3.4.21.73

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.834
4fub 4UPUrokinase-type plasminogen activator 3.4.21.73 0.808
1owe 675Urokinase-type plasminogen activator 3.4.21.73 0.805
4fuj 1U9Urokinase-type plasminogen activator 3.4.21.73 0.805
1owd 497Urokinase-type plasminogen activator 3.4.21.73 0.793
1sqt UI3Urokinase-type plasminogen activator 3.4.21.73 0.792
4fue 7UPUrokinase-type plasminogen activator 3.4.21.73 0.791
4fuf 8UPUrokinase-type plasminogen activator 3.4.21.73 0.789
4fui UI3Urokinase-type plasminogen activator 3.4.21.73 0.789
1u6q 745Urokinase-type plasminogen activator 3.4.21.73 0.770
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.769
1owk 303Urokinase-type plasminogen activator 3.4.21.73 0.756
1owi 426Urokinase-type plasminogen activator 3.4.21.73 0.732
3v0x ANHCationic trypsin 3.4.21.4 0.730
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.722
1ghv 120Prothrombin 3.4.21.5 0.707
1o5g CR9Prothrombin 3.4.21.5 0.707
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.700
4e7r 0NWProthrombin 3.4.21.5 0.696
1vzq SHYProthrombin 3.4.21.5 0.691
1zsk 421Coagulation factor XI 3.4.21.27 0.690
2zfq 45UProthrombin 3.4.21.5 0.684
2bok 784Coagulation factor X 3.4.21.6 0.682
2a2x NA9Prothrombin 3.4.21.5 0.681
2anm CDOProthrombin 3.4.21.5 0.681
2znk 31UProthrombin 3.4.21.5 0.681
1c1u BAIProthrombin 3.4.21.5 0.678
3biv 11UProthrombin 3.4.21.5 0.676
4ne0 ZZUHydroxylase / 0.673
2zi2 24UProthrombin 3.4.21.5 0.669
1c1w BAHProthrombin 3.4.21.5 0.668
4baq M4ZProthrombin 3.4.21.5 0.664
1oyt FSNProthrombin 3.4.21.5 0.661
4djy 0KRBeta-secretase 1 3.4.23.46 0.661
4azy 7F3Beta-secretase 1 3.4.23.46 0.658
1d4p BPPProthrombin 3.4.21.5 0.657
1pw6 FRBInterleukin-2 / 0.656
4acx S8ZBeta-secretase 1 3.4.23.46 0.656
3biu 10UProthrombin 3.4.21.5 0.654
4b05 32DBeta-secretase 1 3.4.23.46 0.654
3l5d BDVBeta-secretase 1 3.4.23.46 0.650