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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fub 4UP Urokinase-type plasminogen activator 3.4.21.73

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fub 4UPUrokinase-type plasminogen activator 3.4.21.73 0.853
4fue 7UPUrokinase-type plasminogen activator 3.4.21.73 0.829
4fuj 1U9Urokinase-type plasminogen activator 3.4.21.73 0.822
1owe 675Urokinase-type plasminogen activator 3.4.21.73 0.808
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.808
1sqt UI3Urokinase-type plasminogen activator 3.4.21.73 0.806
4fui UI3Urokinase-type plasminogen activator 3.4.21.73 0.806
1u6q 745Urokinase-type plasminogen activator 3.4.21.73 0.804
4fuf 8UPUrokinase-type plasminogen activator 3.4.21.73 0.802
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.749
1owd 497Urokinase-type plasminogen activator 3.4.21.73 0.744
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.739
1owi 426Urokinase-type plasminogen activator 3.4.21.73 0.729
1owk 303Urokinase-type plasminogen activator 3.4.21.73 0.728
4e7r 0NWProthrombin 3.4.21.5 0.712
3v0x ANHCationic trypsin 3.4.21.4 0.711
1ghv 120Prothrombin 3.4.21.5 0.709
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.700
2znk 31UProthrombin 3.4.21.5 0.698
1zsk 421Coagulation factor XI 3.4.21.27 0.686
2zfq 45UProthrombin 3.4.21.5 0.685
1ejn AGBUrokinase-type plasminogen activator 3.4.21.73 0.684
1riw OSCProthrombin 3.4.21.5 0.679
2zi2 24UProthrombin 3.4.21.5 0.672
2anm CDOProthrombin 3.4.21.5 0.666
4baq M4ZProthrombin 3.4.21.5 0.664
1w13 SM1Urokinase-type plasminogen activator 3.4.21.73 0.660
3ig6 438Urokinase-type plasminogen activator 3.4.21.73 0.656
4azy 7F3Beta-secretase 1 3.4.23.46 0.655
3biu 10UProthrombin 3.4.21.5 0.654
4acx S8ZBeta-secretase 1 3.4.23.46 0.654
1vzq SHYProthrombin 3.4.21.5 0.653
2zhf 49UProthrombin 3.4.21.5 0.653
3dga RJ1Bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.652
3l5d BDVBeta-secretase 1 3.4.23.46 0.651