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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ftj H8K Serine/threonine-protein kinase Chk1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ftj H8KSerine/threonine-protein kinase Chk1 2.7.11.1 0.825
4fti H7KSerine/threonine-protein kinase Chk1 2.7.11.1 0.805
4fsm HK1Serine/threonine-protein kinase Chk1 2.7.11.1 0.778
4fto 3HKSerine/threonine-protein kinase Chk1 2.7.11.1 0.771
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4ftl H0KSerine/threonine-protein kinase Chk1 2.7.11.1 0.711
4ftq 4HKSerine/threonine-protein kinase Chk1 2.7.11.1 0.694
4fta H5KSerine/threonine-protein kinase Chk1 2.7.11.1 0.682
4fst HK4Serine/threonine-protein kinase Chk1 2.7.11.1 0.680
4fsn A58Serine/threonine-protein kinase Chk1 2.7.11.1 0.668
3vid 4TTVascular endothelial growth factor receptor 2 2.7.10.1 0.666
2yer TQ1Serine/threonine-protein kinase Chk1 2.7.11.1 0.663
2e9u A25Serine/threonine-protein kinase Chk1 2.7.11.1 0.662
2cgu 3A3Serine/threonine-protein kinase Chk1 2.7.11.1 0.661
4e5f 0N7Polymerase acidic protein / 0.660
4e5l DBHPolymerase acidic protein / 0.660
4ft3 H1KSerine/threonine-protein kinase Chk1 2.7.11.1 0.658
2wmr ZYRSerine/threonine-protein kinase Chk1 2.7.11.1 0.651