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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fqf NAD Aldehyde dehydrogenase, mitochondrial 1.2.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fqf NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 1.094
2onp NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.982
1o01 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.971
1o02 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.949
3n82 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.949
1bxs NADRetinal dehydrogenase 1 1.2.1.36 0.925
1o00 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.924
4fr8 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.871
1nzz NAIAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.860
2onm NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.850
4x4l NAIRetinal dehydrogenase 1 1.2.1.36 0.845
4wb9 NAIRetinal dehydrogenase 1 1.2.1.36 0.821
1nzw NAIAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.820
4fr8 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.816
4pxl NADAldehyde dehydrogenase3 / 0.792
4pz2 NADAldehyde dehydrogenase 2-6 / 0.790
1o04 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.788
3rhr NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.787
4i8p NADAminoaldehyde dehydrogenase 1 / 0.785
4oe2 NAD2-aminomuconate 6-semialdehyde dehydrogenase / 0.785
4i1w NAD2-aminomuconate 6-semialdehyde dehydrogenase / 0.784
4gnz NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.781
1cw3 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.779
1nzx NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.779
2j40 NAD1-pyrroline-5-carboxylate dehydrogenase / 0.772
2ehu NAD1-pyrroline-5-carboxylate dehydrogenase / 0.771
4i9b NADPutative betaine aldehyde dehyrogenase / 0.771
1a4z NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.765
1o9j NADAldehyde dehydrogenase, cytosolic 1 1.2.1.3 0.760
3rhj NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.757
2eii NAD1-pyrroline-5-carboxylate dehydrogenase / 0.754
3b4w NADAldehyde dehydrogenase family protein / 0.753
4itb NDPSuccinate-semialdehyde dehydrogenase / 0.753
2bhp NAD1-pyrroline-5-carboxylate dehydrogenase / 0.752
2j5n NAD1-pyrroline-5-carboxylate dehydrogenase / 0.752
3rhl NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.752
3rhq NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.751
4go2 TAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.749
4i3w NADAldehyde dehydrogenase (NAD+) / 0.742
2o2r NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.737
4i8q NADPutative betaine aldehyde dehyrogenase / 0.736
3rho NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.733
1t90 NADMalonate-semialdehyde dehydrogenase 1.2.1.27 0.731
1wnb NAIGamma-aminobutyraldehyde dehydrogenase 1.2.1.19 0.729
4pt0 NADAldehyde dehydrogenase / 0.729
3iwj NADAminoaldehyde dehydrogenase / 0.727
4i3v NADAldehyde dehydrogenase (NAD+) / 0.727
1uxr NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.725
4x2q NADRetinal dehydrogenase 2 1.2.1.36 0.724
2j6l NAIAlpha-aminoadipic semialdehyde dehydrogenase 1.2.1.31 0.722
2euh NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.716
4ihi NADProbable pyrroline-5-carboxylate dehydrogenase RocA / 0.715
4zuk NADAlpha-aminoadipic semialdehyde dehydrogenase 1.2.1.31 0.715
4f3x NADPutative aldehyde dehydrogenase / 0.710
3efv NADPutative succinate-semialdehyde dehydrogenase / 0.708
2d4e NAD5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseiheyensis HTE831] / 0.707
4a0m NADBetaine aldehyde dehydrogenase, chloroplastic 1.2.1.8 0.707
1uxt NADNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.706
2bja NAD1-pyrroline-5-carboxylate dehydrogenase / 0.702
4pt3 NDPAldehyde dehydrogenase / 0.702
2ehq NAP1-pyrroline-5-carboxylate dehydrogenase / 0.701
2y5d NAP3,4-dehydroadipyl-CoA semialdehyde dehydrogenase / 0.699
1uxv NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.697
3zqa NDPNAD/NADP-dependent betaine aldehyde dehydrogenase / 0.696
3v9l NADDelta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial 1.2.1.88 0.693
2jg7 NADAntiquitin / 0.692
4zvy NADAlpha-aminoadipic semialdehyde dehydrogenase 1.2.1.31 0.691
2eit NAD1-pyrroline-5-carboxylate dehydrogenase / 0.688
3n83 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.688
1ez0 NAPNADP-dependent fatty aldehyde dehydrogenase 1.2.1.4 0.686
1bi9 NADRetinal dehydrogenase 2 / 0.673
4v37 NADBetaine aldehyde dehydrogenase, chloroplastic 1.2.1.8 0.672
1uxn NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.671
2qe0 NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.670
4pxn NADAldehyde dehydrogenase family 7 member B4 / 0.668
2o2q NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.662
4oe4 NADDelta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial 1.2.1.88 0.662
1ky8 NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.660
5dib NADBetaine-aldehyde dehydrogenase / 0.660
1uxp NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.656
4h73 NDPAldehyde dehydrogenase / 0.651
1qi1 NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.650
3uf6 CODLmo1369 protein / 0.650