Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fhy 3AT Terminal uridylyltransferase cid1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fhy 3ATTerminal uridylyltransferase cid1 / 1.016
4fh5 UTPTerminal uridylyltransferase cid1 / 0.692
4u03 GTPCyclic GMP-AMP synthase / 0.661
4xj4 3ATCyclic GMP-AMP synthase / 0.660
4xj3 GTPCyclic GMP-AMP synthase / 0.655
4fhp UTPTerminal uridylyltransferase cid1 / 0.654
4u0m GTPCyclic GMP-AMP synthase / 0.651