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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fhp UTP Terminal uridylyltransferase cid1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fhp UTPTerminal uridylyltransferase cid1 / 1.066
4fh5 UTPTerminal uridylyltransferase cid1 / 0.900
2ikf UTPPoly(A) polymerase, putative / 0.780
2b56 UTPRNA editing complex protein MP57 / 0.751
2b51 UTPRNA editing complex protein MP57 / 0.748
2q0f UTPPoly(A) polymerase, putative / 0.734
2q0d ATPPoly(A) polymerase, putative / 0.718
3hiy UTPUncharacterized protein / 0.714
4u03 GTPCyclic GMP-AMP synthase / 0.706
1n75 ATPGlutamate--tRNA ligase 6.1.1.17 0.705
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.700
4xj4 3ATCyclic GMP-AMP synthase / 0.696
2nom DUTPoly(A) polymerase, putative / 0.684
4nm5 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.679
4uak ADPSerine/threonine-protein kinase MRCK beta 2.7.11.1 0.679
2q0c CTPPoly(A) polymerase, putative / 0.677
2w4k ADPDeath-associated protein kinase 1 2.7.11.1 0.676
2dwb ANPAurora kinase A 2.7.11.1 0.674
4df8 0L4DNA polymerase I, thermostable 2.7.7.7 0.672
2q66 ATPPoly(A) polymerase 2.7.7.19 0.671
4u0m GTPCyclic GMP-AMP synthase / 0.671
1fa0 3ATPoly(A) polymerase 2.7.7.19 0.667
3s3t ATPUniversal stress protein / 0.666
5dt4 ATPAurora kinase A 2.7.11.1 0.664
1n2e APCPantothenate synthetase 6.3.2.1 0.662
2b0q ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.661
4ork GDPBifunctional AAC/APH 2.3.1 0.661
4nm7 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.660
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.659
4txz G2PCyclic GMP-AMP synthase / 0.658
4ymu ATPABC-type polar amino acid transport system, ATPase component / 0.656
2gbl ATPCircadian clock protein kinase KaiC 2.7.11.1 0.655
2xuu ADPDeath-associated protein kinase 1 2.7.11.1 0.655
4fhy 3ATTerminal uridylyltransferase cid1 / 0.654
4xj3 GTPCyclic GMP-AMP synthase / 0.654
2az3 CDPNucleoside diphosphate kinase / 0.653
4guk P2GNeuronal calcium sensor 1 / 0.652