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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fhi 0S4 Vitamin D3 receptor A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fhi 0S4Vitamin D3 receptor A / 1.427
4fhh 0U3Vitamin D3 receptor A / 1.231
3w0h W12Vitamin D3 receptor / 0.997
3w0j T08Vitamin D3 receptor / 0.867
3w0y DS4Vitamin D3 receptor / 0.852
3w0i O11Vitamin D3 receptor / 0.813
3w0c 6DSVitamin D3 receptor / 0.797
3w0a DS5Vitamin D3 receptor / 0.796
2zl9 VDAVitamin D3 receptor / 0.767
3dr1 C5DVitamin D3 receptor A / 0.767
4g2h 0VQVitamin D3 receptor A / 0.766
3w0g W07Vitamin D3 receptor / 0.764
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2zlc VDXVitamin D3 receptor / 0.742
4rup H97Vitamin D3 receptor A / 0.711
4g1d 0VKVitamin D3 receptor A / 0.707
3vt3 VDXVitamin D3 receptor / 0.699
2o4r VD5Vitamin D3 receptor / 0.696
1rk3 VDXVitamin D3 receptor / 0.695
3vtc TK3Vitamin D3 receptor / 0.693
2hbh XE4Vitamin D3 receptor A / 0.692
1s0z EB1Vitamin D3 receptor / 0.691
3vt6 5YIVitamin D3 receptor / 0.691
3vt8 YI3Vitamin D3 receptor / 0.690
1db1 VDXVitamin D3 receptor / 0.676
3kpz ZNEVitamin D3 receptor / 0.673
3vt7 VDXVitamin D3 receptor / 0.673
1ie8 KH1Vitamin D3 receptor / 0.671
2zla VDBVitamin D3 receptor / 0.671
3vtd TKDVitamin D3 receptor / 0.670
3vt9 YI4Vitamin D3 receptor / 0.660
4itf TFYVitamin D3 receptor / 0.659
4e5l DBHPolymerase acidic protein / 0.655