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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fh5 UTP Terminal uridylyltransferase cid1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fh5 UTPTerminal uridylyltransferase cid1 / 1.123
4fhp UTPTerminal uridylyltransferase cid1 / 0.900
2q0f UTPPoly(A) polymerase, putative / 0.746
2ikf UTPPoly(A) polymerase, putative / 0.728
2q0c CTPPoly(A) polymerase, putative / 0.722
2nom DUTPoly(A) polymerase, putative / 0.720
4fhy 3ATTerminal uridylyltransferase cid1 / 0.692
2b56 UTPRNA editing complex protein MP57 / 0.687
3hiy UTPUncharacterized protein / 0.685
1n75 ATPGlutamate--tRNA ligase 6.1.1.17 0.667
2x60 GTPMannose-1-phosphate guanylyltransferase / 0.667
2b51 UTPRNA editing complex protein MP57 / 0.666
2q0d ATPPoly(A) polymerase, putative / 0.663
5dt4 ATPAurora kinase A 2.7.11.1 0.662
3s3t ATPUniversal stress protein / 0.655
4txz G2PCyclic GMP-AMP synthase / 0.654
4col DTPUncharacterized protein / 0.653
4u0m GTPCyclic GMP-AMP synthase / 0.652
2aky AP5Adenylate kinase / 0.651
4okk U5P3'-5' exoribonuclease MT2234.1 / 0.651
4qnr ATPPsp operon transcriptional activator / 0.650