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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fgr ADP Phosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fgr ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 1.054
4nye ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 1.020
2z02 ATPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 0.797
2ywv ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase / 0.730
2gqr ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 0.716
3tm0 ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.654
4dh3 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650