Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fdn FAD Decaprenylphosphoryl-beta-D-ribose oxidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.445
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.435
4fdp FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.414
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.327
4f4q FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.317
4pyt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.857
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.842
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.823
3pm9 FADPutative oxidoreductase / 0.822
1mbt FADUDP-N-acetylenolpyruvoylglucosamine reductase 1.3.1.98 0.781
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 0.766
3i99 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.754
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.749
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.739
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.735
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.728
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.716
1ffu FADCarbon monoxide dehydrogenase medium chain / 0.708
4ysw FADXanthine dehydrogenase/oxidase / 0.693
1ycf FMNNitric oxide reductase 1 0.681
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.681
1wyg FADXanthine dehydrogenase/oxidase / 0.675
4jic FMNGTN Reductase / 0.669
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.665
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.663
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.659
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.658
3atz FMNProstaglandin F2a synthase / 0.655
3p8i FMNPentaerythritol tetranitrate reductase / 0.655
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.651
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.651
3kt3 TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.651
3qfr FADNADPH--cytochrome P450 reductase / 0.651
3pl8 FADPyranose 2-oxidase / 0.650