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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fda NAP 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fda NAP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 1.235
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.779
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.720
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.719
4kwh NAPReductase homolog / 0.688
1oaa NAPSepiapterin reductase 1.1.1.153 0.687
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.678
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.676
1e7y NDPGlucose-6-phosphate 1-dehydrogenase / 0.673
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.671
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.667
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.664
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.663
1nyt NAPShikimate dehydrogenase (NADP(+)) / 0.661
3f1k NAPUncharacterized oxidoreductase YciK 1 0.660
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.655
3uce NDPDehydrogenase / 0.653
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.652
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.651
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.650
4x2d ATPFic family protein putative filamentation induced by cAMP protein / 0.650