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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fc7 NAP Peroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 1.520
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.971
5d2e NAPMlnE / 0.887
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.886
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.881
3uce NDPDehydrogenase / 0.880
4hxy NDPPlm1 / 0.877
4dbz NDPPutative ketoacyl reductase 1.3.1 0.874
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.872
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.861
5jyd NADShort chain dehydrogenase / 0.856
2jah NDPClavaldehyde dehydrogenase / 0.851
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.843
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.843
1w4z NAPPutative ketoacyl reductase 1.3.1 0.839
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.836
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.829
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.828
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.826
3p19 NDPPutative blue fluorescent protein / 0.826
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.824
2p5y NADUDP-glucose 4-epimerase / 0.822
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.821
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.820
3r3s NADPutative oxidoreductase / 0.818
2c29 NAPDihydroflavonol 4-reductase / 0.817
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.817
3ai2 NDPNADPH-sorbose reductase / 0.813
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.812
3qrw NDPPutative ketoacyl reductase 1.3.1 0.810
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.809
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.808
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.808
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.805
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.805
1x7h NDPPutative ketoacyl reductase 1.3.1 0.801
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.800
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.799
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.797
3l77 NJPShort-chain alcohol dehydrogenase / 0.797
3ai3 NDPNADPH-sorbose reductase / 0.795
3ko8 NADNAD-dependent epimerase/dehydratase / 0.792
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.792
3ak4 NADNADH-dependent quinuclidinone reductase / 0.790
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.788
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.787
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.785
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.785
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.784
3d3w NAPL-xylulose reductase 1.1.1.10 0.782
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.781
4kwh NAPReductase homolog / 0.781
4hwk NAPSepiapterin reductase 1.1.1.153 0.780
3mje NDPAmphB / 0.779
3wds NADNADH-dependent quinuclidinone reductase / 0.779
4qec NAPElxO / 0.779
1x7g NAPPutative ketoacyl reductase 1.3.1 0.776
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.774
3tn7 NJPShort-chain alcohol dehydrogenase / 0.774
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.773
4j7x NAPSepiapterin reductase 1.1.1.153 0.773
1pr9 NAPL-xylulose reductase 1.1.1.10 0.771
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.771
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.770
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.769
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.767
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.766
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.765
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.764
4l4x NDPAmphI / 0.761
4yag NAIC alpha-dehydrogenase / 0.761
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.760
3icp NADNAD-dependent epimerase/dehydratase / 0.760
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.759
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.758
3sju NDPKeto reductase / 0.757
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.755
4bmv NAPShort-chain dehydrogenase / 0.755
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.754
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.753
4imp NDPPolyketide synthase extender modules 3-4 / 0.752
4qed NAPElxO / 0.752
4b79 NADProbable short-chain dehydrogenase / 0.750
4j7u NAPSepiapterin reductase 1.1.1.153 0.749
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.749
1sny NAPLD36273p / 0.748
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.747
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.746
2dte NAIGlucose 1-dehydrogenase related protein / 0.743
3tox NAPPutative oxidoreductase / 0.743
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.741
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.741
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.738
2wdz NADGalactitol dehydrogenase / 0.737
3f1k NAPUncharacterized oxidoreductase YciK 1 0.737
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.737
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.736
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.735
4yai NAIC alpha-dehydrogenase / 0.735
3o26 NDPSalutaridine reductase / 0.734
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.734
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.733
1oaa NAPSepiapterin reductase 1.1.1.153 0.732
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.732
3bmo NAPPteridine reductase / 0.732
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.731
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.731
1d4o NAPNAD(P) transhydrogenase, mitochondrial / 0.730
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.730
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.730
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.730
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.728
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.728
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.728
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.727
1ipe NDPTropinone reductase 2 1.1.1.236 0.726
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.726
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.726
3u4c NDPNADPH-dependent reductase BacG / 0.725
3aw9 NADNAD-dependent epimerase/dehydratase / 0.723
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.723
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.722
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.722
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.721
3tsc NADUncharacterized protein / 0.719
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.719
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.718
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.717
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.717
4id9 NADPutative UDP-glucose 4-epimerase / 0.717
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.717
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.716
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.716
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.716
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.715
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.714
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.712
5lc1 NADL-threonine 3-dehydrogenase / 0.712
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.711
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.710
1enp NADEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic 1.3.1.9 0.709
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.708
4idg NADPutative UDP-glucose 4-epimerase / 0.707
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.706
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.705
4ejm NAPPutative zinc-binding dehydrogenase / 0.705
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.704
1i3l NADUDP-glucose 4-epimerase / 0.703
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.703
1zem NADXylitol dehydrogenase / 0.702
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.702
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.702
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.701
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.700
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.700
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.700
1sby NADAlcohol dehydrogenase 1.1.1.1 0.699
3a9w NADNDP-sugar epimerase / 0.699
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.699
4eso NAPPutative oxidoreductase / 0.699
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.698
4wec NADShort chain dehydrogenase / 0.697
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.696
2z1m NDPGDP-mannose 4,6-dehydratase / 0.695
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.694
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.693
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.693
4n5n NAPAcetoacetyl-CoA reductase 1.1.1.36 0.693
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.692
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.692
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.692
5j23 A2RPutative 2-hydroxyacid dehydrogenase / 0.692
2bd0 NAPSepiapterin reductase / 0.691
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.691
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.690
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.689
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.688
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.688
4j16 NAPNAD(P) transhydrogenase subunit beta / 0.688
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.687
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.686
4fn4 NADShort chain dehydrogenase / 0.686
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.685
1ae1 NAPTropinone reductase 1 / 0.684
1g1a NADdTDP-glucose 4,6-dehydratase / 0.684
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.684
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.684
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.682
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.682
1orr NADCDP-paratose 2-epimerase / 0.681
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.679
2qx7 NAPEugenol synthase 1 1.1.1.318 0.679
2wsb NADGalactitol dehydrogenase / 0.679
4o1m NADEnoyl-acyl carrier reductase / 0.676
1djl NAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 0.674
2bfo NDPPteridine reductase 1 1.5.1.33 0.674
2yut NAPPutative short-chain oxidoreductase / 0.674
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.674
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.673
3sx2 NADUncharacterized protein / 0.673
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.672
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.671
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.671
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.670
1rpn NDPGDP-mannose 4,6-dehydratase / 0.668
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.668
1iy8 NADLevodione reductase / 0.667
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.667
2qw8 NAPEugenol synthase 1 1.1.1.318 0.666
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.665
1hzz NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.664
4gcm NAPThioredoxin reductase 1.8.1.9 0.664
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
3orf NADDihydropteridine reductase 1.5.1.34 0.663
2z95 NDPGDP-mannose 4,6-dehydratase / 0.662
3ajr NADNDP-sugar epimerase / 0.662
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.661
3a1n NADNDP-sugar epimerase / 0.659
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.659
4yaf 2AMNADPH--cytochrome P450 reductase / 0.659
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.658
2x86 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.657
5jla NADPutative short-chain dehydrogenase/reductase / 0.657
4clo NAPPteridine reductase / 0.655
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.655
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.655
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.654
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.653
3h4v NAPPteridine reductase 1 1.5.1.33 0.653
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.653
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.652
4u7w NDPMxaA / 0.652
3geg NADShort-chain dehydrogenase/reductase SDR / 0.651
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.650
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.650