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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fag GTQ Gentisate 1,2-dioxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fag GTQGentisate 1,2-dioxygenase / 0.923
3nl1 GTQGentisate 1,2-dioxygenase / 0.847
3nw4 GTQGentisate 1,2-dioxygenase / 0.837
3nkt 1HNGentisate 1,2-dioxygenase / 0.782
2y85 137Phosphoribosyl isomerase A 5.3.1.16 0.673
3axw TIDCasein kinase II subunit alpha 2.7.11.1 0.660
1jje BYSBeta-lactamase / 0.655
3mw0 BHRNickel-binding periplasmic protein / 0.655
3mzb BHRNickel-binding periplasmic protein / 0.655
3mvw BHZNickel-binding periplasmic protein / 0.652