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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4f79 P53 Putative phospho-beta-glucosidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4f79 P53Putative phospho-beta-glucosidase / 1.202
2j7c IDEBeta-glucosidase A 3.2.1.21 0.810
2wbg LGSBeta-glucosidase A 3.2.1.21 0.789
2e40 LGCBeta-glucosidase 1A 3.2.1.21 0.751
3ptq NFGBeta-glucosidase 12 / 0.739
3zj7 C1KStrictosidine-O-beta-D-glucosidase 3.2.1.105 0.735
3zj6 VM2Raucaffricine-O-beta-D-glucosidase 3.2.1.125 0.720
3vil SA0Beta-glucosidase / 0.718
2j7d GI1Beta-glucosidase A 3.2.1.21 0.717
2xwe AMFGlucosylceramidase 3.2.1.45 0.695
3pe2 E1BCasein kinase II subunit alpha 2.7.11.1 0.663
1qrt ATPGlutamine--tRNA ligase 6.1.1.18 0.657
2e9o A58Serine/threonine-protein kinase Chk1 2.7.11.1 0.654
1yxq ATPActin, alpha skeletal muscle / 0.653
3fl5 TXQCasein kinase II subunit alpha 2.7.11.1 0.653
2wcg MT5Glucosylceramidase 3.2.1.45 0.650
3a5m ATPMajor actin / 0.650