Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4f4d CHD Ferrochelatase, mitochondrial 4.99.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4f4d CHDFerrochelatase, mitochondrial 4.99.1.1 1.039
2qd3 CHDFerrochelatase, mitochondrial 4.99.1.1 0.818
4kla CHDFerrochelatase, mitochondrial 4.99.1.1 0.767
4qe6 JN3Bile acid receptor / 0.688
3k9v CPS1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial / 0.675
1ot7 IU5Bile acid receptor / 0.674
1xu9 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.668
4klr CHDFerrochelatase, mitochondrial 4.99.1.1 0.667
1osv CHCBile acid receptor / 0.658
2jn3 JN3Fatty acid-binding protein, liver / 0.654