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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4f3g KAI Glutamate receptor 3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4f3g KAIGlutamate receptor 3 / 0.986
1fw0 KAIGlutamate receptor 2 / 0.949
4f31 KAIGlutamate receptor 3 / 0.935
3kfm KAIGlutamate receptor 4 / 0.926
1lbb KAIGlutamate receptor 2 / 0.923
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.912
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.910
3c34 KAIGlutamate receptor ionotropic, kainate 1 / 0.906
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 0.903
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.886
2pbw DOQGlutamate receptor ionotropic, kainate 1 / 0.879
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.815
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.808
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.789
2wky IBCGlutamate receptor ionotropic, kainate 1 / 0.744
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.725
3rt8 CWDGlutamate receptor 3 / 0.715
3h03 UBPGlutamate receptor 2 / 0.709
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.689
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.681
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.673
1sdw IYTPeptidyl-glycine alpha-amidating monooxygenase 1.14.17.3 0.665
1opm IYGPeptidyl-glycine alpha-amidating monooxygenase 1.14.17.3 0.662
5bp9 SAHPutative methyltransferase protein / 0.661
2h00 SAHU6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase / 0.658
2qs3 UBEGlutamate receptor ionotropic, kainate 1 / 0.658
3tza TZGGlutamate receptor 2 / 0.657
3vp6 HLDGlutamate decarboxylase 1 4.1.1.15 0.657
2fzj DH3Dihydrofolate reductase 1.5.1.3 0.655
3t0i SAHPutative methyltransferase / 0.653
3fvu IACKynurenine--oxoglutarate transaminase 1 2.6.1.7 0.652
2yqz SAMUncharacterized protein / 0.651