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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4f31 KAI Glutamate receptor 3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4f31 KAIGlutamate receptor 3 / 1.003
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 0.937
4f3g KAIGlutamate receptor 3 / 0.935
3kfm KAIGlutamate receptor 4 / 0.922
3c34 KAIGlutamate receptor ionotropic, kainate 1 / 0.921
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.917
1lbb KAIGlutamate receptor 2 / 0.912
1fw0 KAIGlutamate receptor 2 / 0.908
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.902
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.902
2pbw DOQGlutamate receptor ionotropic, kainate 1 / 0.857
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.852
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.815
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.738
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.738
2wky IBCGlutamate receptor ionotropic, kainate 1 / 0.723
4gxs 0YSGlutamate receptor 2 / 0.716
3tza TZGGlutamate receptor 2 / 0.705
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.686
2qs4 LY5Glutamate receptor ionotropic, kainate 1 / 0.683
3rt8 CWDGlutamate receptor 3 / 0.680
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.666
3h03 UBPGlutamate receptor 2 / 0.666
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.658
2h00 SAHU6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase / 0.652
2yqz SAMUncharacterized protein / 0.652
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.651