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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4f0f ACP Probable serine/threonine-protein kinase roco4 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4f0f ACPProbable serine/threonine-protein kinase roco4 2.7.11.1 0.871
4f1m ACPProbable serine/threonine-protein kinase roco4 2.7.11.1 0.719
2qoq ANPEphrin type-A receptor 3 2.7.10.1 0.690
4f1o ACPProbable serine/threonine-protein kinase roco4 2.7.11.1 0.677
4fl1 ANPTyrosine-protein kinase SYK 2.7.10.2 0.662
1mqb ANPEphrin type-A receptor 2 2.7.10.1 0.660
1lp4 ANPCasein kinase II subunit alpha 2.7.11.1 0.659
1zy5 ANPeIF-2-alpha kinase GCN2 / 0.655
1daw ANPCasein kinase II subunit alpha 2.7.11.1 0.654
1jqh ANPInsulin-like growth factor 1 receptor 2.7.10.1 0.654
4ckj ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.652
1drt PCVClavaminate synthase 1 1.14.11.21 0.651
2pup ADPMethylthioribose kinase 2.7.1.100 0.650
3lij ANPCalcium/calmodulin dependent protein kinase with a kinase domain and 4 calmodulin like EF hands / 0.650