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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ey6 GNT Acetylcholinesterase 3.1.1.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ey6 GNTAcetylcholinesterase 3.1.1.7 0.806
1w6r GNTAcetylcholinesterase 3.1.1.7 0.749
1w76 GNTAcetylcholinesterase 3.1.1.7 0.704
1qti GNTAcetylcholinesterase 3.1.1.7 0.682
1dx6 GNTAcetylcholinesterase 3.1.1.7 0.661