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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4eu4 COA Succinyl-CoA:acetate CoA-transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4eu4 COASuccinyl-CoA:acetate CoA-transferase / 1.011
5dw6 0T1Succinyl-CoA:acetate CoA-transferase / 0.777
4eu5 COASuccinyl-CoA:acetate CoA-transferase / 0.774
4eu8 COASuccinyl-CoA:acetate CoA-transferase / 0.770
4eu9 COASuccinyl-CoA:acetate CoA-transferase / 0.768
5dw5 0T1Succinyl-CoA:acetate CoA-transferase / 0.754
4euc 0RQSuccinyl-CoA:acetate CoA-transferase / 0.742
4eua COASuccinyl-CoA:acetate CoA-transferase / 0.735
4eud COASuccinyl-CoA:acetate CoA-transferase / 0.735
5e5h 0T1Succinyl-CoA:acetate CoA-transferase / 0.732
4eub COASuccinyl-CoA:acetate CoA-transferase / 0.721
4eu6 COASuccinyl-CoA:acetate CoA-transferase / 0.711