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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4erf 0R3 E3 ubiquitin-protein ligase Mdm2 6.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4erf 0R3E3 ubiquitin-protein ligase Mdm2 6.3.2 1.145
4hbm 0Y7E3 ubiquitin-protein ligase Mdm2 6.3.2 0.845
4ere 0R2E3 ubiquitin-protein ligase Mdm2 6.3.2 0.814
4jwr 1MYE3 ubiquitin-protein ligase Mdm2 6.3.2 0.814
4jsc 1OYE3 ubiquitin-protein ligase Mdm2 6.3.2 0.745
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4jrg I09E3 ubiquitin-protein ligase Mdm2 6.3.2 0.727
4jvr 1MTE3 ubiquitin-protein ligase Mdm2 6.3.2 0.712
4dij BLFE3 ubiquitin-protein ligase Mdm2 6.3.2 0.705
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.676
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660