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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ere 0R2 E3 ubiquitin-protein ligase Mdm2 6.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ere 0R2E3 ubiquitin-protein ligase Mdm2 6.3.2 1.204
4hbm 0Y7E3 ubiquitin-protein ligase Mdm2 6.3.2 0.854
4erf 0R3E3 ubiquitin-protein ligase Mdm2 6.3.2 0.814
4jrg I09E3 ubiquitin-protein ligase Mdm2 6.3.2 0.745
4jwr 1MYE3 ubiquitin-protein ligase Mdm2 6.3.2 0.693
4jsc 1OYE3 ubiquitin-protein ligase Mdm2 6.3.2 0.689
4dij BLFE3 ubiquitin-protein ligase Mdm2 6.3.2 0.684
3kc1 2T6Fructose-1,6-bisphosphatase 1 3.1.3.11 0.663
2lzg 13QE3 ubiquitin-protein ligase Mdm2 6.3.2 0.654