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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4eqr FAD Coenzyme A disulfide reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4eqr FADCoenzyme A disulfide reductase / 1.444
4eqs FADCoenzyme A disulfide reductase / 1.403
1yqz FADCoenzyme A disulfide reductase / 1.386
4em4 FADCoenzyme A disulfide reductase / 1.357
4eqw FADCoenzyme A disulfide reductase / 1.351
4em3 FADCoenzyme A disulfide reductase / 1.296
4emw FADCoenzyme A disulfide reductase / 1.284
4eqx FADCoenzyme A disulfide reductase / 1.283
3icr FADCoenzyme A disulfide reductase / 1.065
3ics FADCoenzyme A disulfide reductase / 1.061
3lxd FADFAD-dependent pyridine nucleotide-disulfide oxidoreductase / 0.950
3nt6 FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.942
3fg2 FADPutative rubredoxin reductase / 0.928
3nta FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.928
3ntd FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.901
3ict FADCoenzyme A disulfide reductase / 0.883
4ocg FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.862
5fs8 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.846
1nhq FADNADH peroxidase 1.11.1.1 0.839
1npx FADNADH peroxidase 1.11.1.1 0.832
2npx FADNADH peroxidase 1.11.1.1 0.823
1nhr FADNADH peroxidase 1.11.1.1 0.822
1nhp FADNADH peroxidase 1.11.1.1 0.821
2yqu FADDihydrolipoyl dehydrogenase / 0.815
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.810
4fx9 FADCoenzyme A disulfide reductase 1.8.1.14 0.804
4emj FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 0.801
3lzw FADFerredoxin--NADP reductase 2 1.18.1.2 0.797
2fjd SFDAdenylylsulfate reductase, subunit A (AprA) / 0.793
4h4z FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.793
1f8w FADNADH peroxidase 1.11.1.1 0.787
3cgd FADCoenzyme A disulfide reductase / 0.787
2gr3 FADFerredoxin reductase / 0.784
1q1r FADPutidaredoxin reductase 1.18.1.5 0.779
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.779
2qa1 FADPgaE / 0.779
5fs9 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.774
4b68 FADL-ornithine N(5)-monooxygenase / 0.771
2vou FAD2,6-dihydroxypyridine 3-monooxygenase 1.14.13.10 0.767
2yvj FADFerredoxin reductase / 0.766
1d7y FADFerredoxin reductase / 0.765
4hb9 FADUncharacterized protein / 0.764
3dh9 FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.763
4b64 FADL-ornithine N(5)-monooxygenase / 0.763
3t37 FADPyridoxine 4-oxidase / 0.762
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.761
1jnr FADAdenylylsulfate reductase, subunit A (AprA) / 0.759
1mo9 FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.759
2eq6 FADDihydrolipoyl dehydrogenase / 0.758
3rnm FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.755
2rab FADGlutathione amide reductase / 0.753
2fja FADAdenylylsulfate reductase, subunit A (AprA) / 0.751
4g6g FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.749
2fjb SFDAdenylylsulfate reductase, subunit A (AprA) / 0.747
3qfa FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.746
1k0j FADp-hydroxybenzoate hydroxylase / 0.745
5fs6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.745
1nhs FADNADH peroxidase 1.11.1.1 0.744
1tde FADThioredoxin reductase 1.8.1.9 0.740
3gwd FADCyclohexanone monooxygenase / 0.738
1tdf FADThioredoxin reductase 1.8.1.9 0.737
3cge FADCoenzyme A disulfide reductase / 0.737
1rp0 AHZThiamine thiazole synthase, chloroplastic / 0.736
1dnc FADGlutathione reductase, mitochondrial 1.8.1.7 0.735
3cgb FADCoenzyme A disulfide reductase / 0.735
2r9z FADGlutathione amide reductase / 0.734
3grs FADGlutathione reductase, mitochondrial 1.8.1.7 0.734
3gwf FADCyclohexanone monooxygenase / 0.733
4tm3 FADKtzI / 0.733
2rgj FADFlavin-containing monooxygenase / 0.732
4gap FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.732
3oz2 FADDigeranylgeranylglycerophospholipid reductase / 0.730
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.729
3ean FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.729
4x4j FADPutative oxygenase / 0.729
3djg FADGlutathione reductase, mitochondrial 1.8.1.7 0.728
3dk4 FADGlutathione reductase, mitochondrial 1.8.1.7 0.728
3ic9 FADPutative dihydrolipoamide dehydrogenase / 0.728
2eq8 FADDihydrolipoyl dehydrogenase / 0.727
4g9k FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.726
4b69 FADL-ornithine N(5)-monooxygenase / 0.725
1q1w FADPutidaredoxin reductase 1.18.1.5 0.724
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.723
2x3n FADProbable FAD-dependent monooxygenase / 0.722
3nix FADFlavoprotein/dehydrogenase / 0.721
5j60 FADThioredoxin reductase / 0.717
1gre FADGlutathione reductase, mitochondrial 1.8.1.7 0.715
3up5 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.715
4bv6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.714
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.713
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.713
4k5r FADOxygenase / 0.713
4nzh FADL-ornithine N(5)-monooxygenase / 0.712
4h50 FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.711
4j34 FADKynurenine 3-monooxygenase / 0.711
4opc FDAConserved Archaeal protein / 0.711
1grb FADGlutathione reductase, mitochondrial 1.8.1.7 0.710
2w0h FADTrypanothione reductase / 0.710
5buk FADFADH2-dependent halogenase / 0.710
2xdo FADTetX family tetracycline inactivation enzyme / 0.709
4icy FADPgaE / 0.709
5eow FAD6-hydroxynicotinate 3-monooxygenase 1.14.13.114 0.709
1bwc FADGlutathione reductase, mitochondrial 1.8.1.7 0.708
1m6i FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.708
3qvp FADGlucose oxidase 1.1.3.4 0.708
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.706
3klj FADNADH-rubredoxin oxidoreductase 1.18.1.1 0.705
4j36 FADKynurenine 3-monooxygenase / 0.705
2jae FADL-amino acid oxidase / 0.704
3rp8 FADFAD-dependent urate hydroxylase / 0.704
1jnz FADAdenylylsulfate reductase, subunit A (AprA) / 0.703
3atq FDAConserved Archaeal protein / 0.703
3g5s FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.703
1joa FADNADH peroxidase 1.11.1.1 0.702
4cy8 FDA2-hydroxybiphenyl-3-monooxygenase / 0.702
2yvf FADFerredoxin reductase / 0.701
3nlc FADUncharacterized protein / 0.701
4a5l FADThioredoxin reductase / 0.701
4opd FDAConserved Archaeal protein / 0.701
4rsl FADFructosyl peptide oxidase / 0.701
3ef6 FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 0.700
4j33 FADKynurenine 3-monooxygenase / 0.700
3bg7 FADPyranose 2-oxidase / 0.699
4tm4 FDAKtzI / 0.699
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.698
4i58 FADCyclohexylamine Oxidase / 0.698
4nte FADDepH / 0.698
2c31 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.697
2nvk FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.697
2q0k FADThioredoxin reductase 1.8.1.9 0.697
3k30 ADPHistamine dehydrogenase / 0.697
4g73 FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.697
2q7v FADThioredoxin reductase / 0.696
2yls FADPhenylacetone monooxygenase 1.14.13.92 0.696
3cgc FADCoenzyme A disulfide reductase / 0.696
1d4d FADFumarate reductase flavoprotein subunit 1.3.5.4 0.695
1f3p FADFerredoxin reductase / 0.695
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.694
3dk8 FADGlutathione reductase, mitochondrial 1.8.1.7 0.694
3l8k ADPDihydrolipoamide dehydrogenase (PdhD-3) / 0.694
4up3 FADThioredoxin reductase / 0.694
1cf3 FADGlucose oxidase 1.1.3.4 0.693
2gqf FADUncharacterized protein HI_0933 / 0.693
1get FADGlutathione reductase 1.8.1.7 0.692
1trb FADThioredoxin reductase 1.8.1.9 0.691
2r0c FADPutative FAD-monooxygenase / 0.690
3g5q FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.690
4jn9 FADDepH / 0.690
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.689
3djj FADGlutathione reductase, mitochondrial 1.8.1.7 0.688
3f8d FADNADH oxidase/thioredoxin reductase / 0.688
4k2x FADPolyketide oxygenase/hydroxylase / 0.688
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.687
3utg FDAUDP-galactopyranose mutase / 0.687
1h6v FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.686
3syi FADSulfide-quinone reductase / 0.686
3urh FADDihydrolipoyl dehydrogenase / 0.686
3zdn FADMonoamine oxidase N 1.4.3.4 0.686
1pdh FASp-hydroxybenzoate hydroxylase / 0.685
4a99 FADTetX family tetracycline inactivation enzyme / 0.685
1gv4 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.684
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.684
2xve FADPutative flavin-containing monooxygenase / 0.683
4yry FADGlutamate synthase, beta subunit / 0.683
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.682
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.682
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.682
1zk7 FADMercuric reductase 1.16.1.1 0.681
2ylr FADPhenylacetone monooxygenase 1.14.13.92 0.681
3oc4 FADOxidoreductase, pyridine nucleotide-disulfide family / 0.681
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.681
1grg FADGlutathione reductase, mitochondrial 1.8.1.7 0.680
2tpr FADTrypanothione reductase 1.8.1.12 0.680
3mj4 FADUDP-galactopyranose mutase / 0.680
4u8n FDAUDP-galactopyranose mutase / 0.680
1e1m FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.679
1grh FADGlutathione reductase, mitochondrial 1.8.1.7 0.679
4fwf FADLysine-specific histone demethylase 1B 1 0.679
4g74 FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.679
4gde FDAUDP-galactopyranose mutase / 0.679
3cnd FADPolyamine oxidase FMS1 / 0.678
1lpf FADDihydrolipoyl dehydrogenase 1.8.1.4 0.677
4dna FADProbable glutathione reductase / 0.677
2yg4 FADPutrescine oxidase / 0.676
3dgh FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.676
3m12 FADMonomeric sarcosine oxidase 1.5.3.1 0.676
3nyc FADFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.676
4bur FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.676
1fl2 FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.675
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.675
2eq7 FADDihydrolipoyl dehydrogenase / 0.674
3qvr FADGlucose oxidase 1.1.3.4 0.674
3t2z FADSulfide-quinone reductase / 0.674
4a65 FADThioredoxin reductase / 0.674
1gxf FADTrypanothione reductase 1.8.1.12 0.673
4nev FADTrypanothione reductase / 0.673
3ad9 FADSubunit beta of sarcosine oxidase / 0.672
3lad FADDihydrolipoyl dehydrogenase / 0.672
4u8l FDAUDP-galactopyranose mutase / 0.672
1cbo FADCholesterol oxidase 1.1.3.6 0.671
1cc2 FADCholesterol oxidase 1.1.3.6 0.671
1ng3 FADGlycine oxidase 1.4.3.19 0.671
3ukf FDAUDP-galactopyranose mutase / 0.671
3uth FDAUDP-galactopyranose mutase / 0.671
2igo FADPyranose 2-oxidase / 0.670
4ccq FADThioredoxin reductase / 0.670
4u2t FADCholesterol oxidase 1.1.3.6 0.670
4ytn FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.670
2gr0 FADFerredoxin reductase / 0.669
3m0o FADMonomeric sarcosine oxidase 1.5.3.1 0.669
3sqp FADGlutathione reductase, mitochondrial 1.8.1.7 0.669
4yxd FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.669
5hxw FADL-amino acid deaminase / 0.668
1ng4 FADGlycine oxidase 1.4.3.19 0.667
2zz0 FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.667
2zzc FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.667
3ish FADThioredoxin reductase 1.8.1.9 0.667
4h4y FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.667
4c5o FADPutative monooxygenase / 0.666
4u8o FDAUDP-galactopyranose mutase / 0.666
4wx1 FDAUDP-galactopyranose mutase / 0.666
2jk6 FADTrypanothione reductase / 0.665
2yr4 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.665
3dme FADPutative conserved exported protein / 0.665
3gyj FADCholesterol oxidase 1.1.3.6 0.665
1e1n FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.664
1zx9 FADMercuric reductase 1.16.1.1 0.664
1ger FADGlutathione reductase 1.8.1.7 0.663
3bi5 FADPolyamine oxidase FMS1 / 0.663
4u8k FDAUDP-galactopyranose mutase / 0.663
1ojt FADDihydrolipoyl dehydrogenase / 0.662
2cdu ADPNADH oxidase / 0.662
2ji6 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.662
4g6h FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.662
4kvz SAHPtnL protein / 0.662
2cfy FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.661
2yg6 FADPutrescine oxidase / 0.661
2ym2 FADPhenylacetone monooxygenase 1.14.13.92 0.661
3k4c FADPyranose 2-oxidase / 0.661
3mht SAHModification methylase HhaI 2.1.1.37 0.661
4z26 FADPutative GMC-type oxidoreductase R135 1 0.661
2qa2 FADPolyketide oxygenase CabE / 0.660
3cn8 FADPolyamine oxidase FMS1 / 0.660
3lb8 FADPutidaredoxin reductase 1.18.1.5 0.660
4mo2 FADUDP-galactopyranose mutase / 0.660
4u8i FDAUDP-galactopyranose mutase / 0.660
9mht SAHModification methylase HhaI 2.1.1.37 0.660
1rsg FADPolyamine oxidase FMS1 / 0.659
2gqw FADFerredoxin reductase / 0.659
4h4u FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.659
2e1m FADL-glutamate oxidase / 0.658
2rgh FADAlpha-Glycerophosphate Oxidase / 0.658
3rha FDAPutrescine oxidase / 0.658
4dsh FDAUncharacterized protein / 0.658
4guu FA9Lysine-specific histone demethylase 1B 1 0.658
2bac FADPutative aminooxidase / 0.656
2hqm FADGlutathione reductase 1.8.1.7 0.656
2jb2 FADL-amino acid oxidase / 0.656
2x8g FADThioredoxin glutathione reductase / 0.656
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.655
2jb1 FADL-amino acid oxidase / 0.655
2yg3 FADPutrescine oxidase / 0.655
3aeb FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.655
4j57 FADThioredoxin reductase 2 1.8.1.9 0.655
4uir FADOleate hydratase 4.2.1.53 0.655
1b4v FADCholesterol oxidase 1.1.3.6 0.654
1vdc FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.654
4opg FDAConserved Archaeal protein / 0.654
1d7l RFLp-hydroxybenzoate hydroxylase / 0.653
1e1l FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.653
1phh FADp-hydroxybenzoate hydroxylase / 0.653
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.653
2zbw FADFerredoxin--NADP reductase / 0.653
1djn ADPTrimethylamine dehydrogenase 1.5.8.2 0.652
1geu FADGlutathione reductase 1.8.1.7 0.652
3cnj FADCholesterol oxidase 1.1.3.6 0.652
3dk9 FADGlutathione reductase, mitochondrial 1.8.1.7 0.652
4c3y FAD3-ketosteroid dehydrogenase / 0.652
4cbq FADThioredoxin reductase / 0.652
1zy8 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.651
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.651
3sz0 FADSulfide-quinone reductase / 0.651
4d7e FADPutative lysine-N-oxygenase / 0.651
4gav FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.651
4gcm FADThioredoxin reductase 1.8.1.9 0.651
4tlz FADKtzI / 0.651
4xwz FADFructosyl amine:oxygen oxidoreductase / 0.651
4z24 FADPutative GMC-type oxidoreductase R135 1 0.651
2iw5 FADLysine-specific histone demethylase 1A 1 0.650
2o06 MTASpermidine synthase 2.5.1.16 0.650
3we0 FADLysine 2-monooxygenase / 0.650
4opu FDAConserved Archaeal protein / 0.650
5c2t FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.650