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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4eox 0S5 Peptide deformylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4eox 0S5Peptide deformylase / 0.974
3u7l UDBPeptide deformylase / 0.723
2os1 BB2Peptide deformylase / 0.691
4je7 BB2Peptide deformylase 1A, chloroplastic/mitochondrial 3.5.1.88 0.680
1ix1 BB2Peptide deformylase / 0.658
3pn4 BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.658
3svj 4LIPeptide deformylase / 0.656
1lqy BB2Peptide deformylase 2 3.5.1.88 0.654
3m6p BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.654
2aia SB8Peptide deformylase / 0.653