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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4emy PLP Aminotransferase class I and II

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4emy PLPAminotransferase class I and II / 1.035
3qpg 3QPAspartate aminotransferase 2.6.1.1 0.831
1arg PPDAspartate aminotransferase 2.6.1.1 0.757
1cq7 PY5Aspartate aminotransferase 2.6.1.1 0.742
4je5 PLPAromatic/aminoadipate aminotransferase 1 2.6.1.39 0.734
4rkd KETAminotransferase / 0.733
1x28 PGUAspartate aminotransferase 2.6.1.1 0.727
1u08 PLPMethionine aminotransferase / 0.725
3ele PLPAminotransferase / 0.724
1cq8 PY6Aspartate aminotransferase 2.6.1.1 0.716
4ge4 0KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.709
1arh PPDAspartate aminotransferase 2.6.1.1 0.707
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 0.705
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.702
1oxo IK2Aspartate aminotransferase, mitochondrial 2.6.1.1 0.693
1map KETAspartate aminotransferase, mitochondrial 2.6.1.1 0.676
1cq6 PY4Aspartate aminotransferase 2.6.1.1 0.673
4w5k PLPAspartate aminotransferase, mitochondrial / 0.672
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.671
4wxg 2BOSerine hydroxymethyltransferase / 0.666
4fl0 PLPAminotransferase ALD1, chloroplastic 2.6.1 0.664
1aka PLPAspartate aminotransferase, mitochondrial 2.6.1.1 0.662
1a4i NDPC-1-tetrahydrofolate synthase, cytoplasmic 1.5.1.5 0.661
3q8x UD1Toxin zeta / 0.659
2nli FMNLactate oxidase / 0.657
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.655
2gqn BLPCystathionine beta-lyase MetC 4.4.1.8 0.655
1j7k ATPHolliday junction ATP-dependent DNA helicase RuvB / 0.652
3ei8 PL5LL-diaminopimelate aminotransferase, chloroplastic / 0.652
1ahg TYR_PLPAspartate aminotransferase 2.6.1.1 0.651