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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4emi NAD Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4emi NADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 1.288
2yvg NADFerredoxin reductase / 0.989
2yvf NADFerredoxin reductase / 0.824
2yvj NAIFerredoxin reductase / 0.821
3cgd NADCoenzyme A disulfide reductase / 0.814
1zmd NAIDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.778
2gr0 ADPFerredoxin reductase / 0.773
4bur NADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.768
1f3p NADFerredoxin reductase / 0.759
2npx NADNADH peroxidase 1.11.1.1 0.755
3cge NDPCoenzyme A disulfide reductase / 0.732
2gr2 APRFerredoxin reductase / 0.730
2eq7 NADDihydrolipoyl dehydrogenase / 0.704
4b66 NAPL-ornithine N(5)-monooxygenase / 0.700
3ggp NADPrephenate dehydrogenase / 0.693
4cnk FADL-amino acid oxidase / 0.686
1f8r FADL-amino-acid oxidase 1.4.3.2 0.682
1geu NADGlutathione reductase 1.8.1.7 0.678
3ggo NAIPrephenate dehydrogenase / 0.677
2dc1 NADProbable L-aspartate dehydrogenase / 0.675
2ba9 FADPutative aminooxidase / 0.671
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.666
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.665
1kol NADGlutathione-independent formaldehyde dehydrogenase / 0.661
1pdh FASp-hydroxybenzoate hydroxylase / 0.661
4b65 NDPL-ornithine N(5)-monooxygenase / 0.661
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.661
1mgo NADAlcohol dehydrogenase E chain 1.1.1.1 0.660
5kjf NAJAlcohol dehydrogenase E chain 1.1.1.1 0.660
1ht0 NADAlcohol dehydrogenase 1C 1.1.1.1 0.659
1u3v NADAlcohol dehydrogenase 1B 1.1.1.1 0.658
2oxi NADAlcohol dehydrogenase E chain 1.1.1.1 0.658
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.658
1hku NADC-terminal-binding protein 1 1.1.1 0.656
2ohx NADAlcohol dehydrogenase E chain 1.1.1.1 0.655
1yqx NAPSinapyl alcohol dehydrogenase / 0.654
5fs6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.652
1hdz NADAlcohol dehydrogenase 1B 1.1.1.1 0.650
1sby NADAlcohol dehydrogenase 1.1.1.1 0.650