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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ema BRL Peroxisome proliferator-activated receptor gamma

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ema BRLPeroxisome proliferator-activated receptor gamma / 1.140
4xld BRLPeroxisome proliferator-activated receptor gamma / 0.922
1fm6 BRLPeroxisome proliferator-activated receptor gamma / 0.893
1zgy BRLPeroxisome proliferator-activated receptor gamma / 0.803
1knu YPAPeroxisome proliferator-activated receptor gamma / 0.770
4o8f BRLPeroxisome proliferator-activated receptor gamma / 0.734
1i7g AZ2Peroxisome proliferator-activated receptor alpha / 0.721
2pob GW4Peroxisome proliferator-activated receptor gamma / 0.689
1fm9 570Peroxisome proliferator-activated receptor gamma / 0.671
1k7l 544Peroxisome proliferator-activated receptor alpha / 0.670
2q8s L92Peroxisome proliferator-activated receptor gamma / 0.664
4phu 2YBFree fatty acid receptor 1 / 0.657
1i7i AZ2Peroxisome proliferator-activated receptor gamma / 0.654