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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ei7 GDP Plasmid replication protein RepX

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4ei7 GDPPlasmid replication protein RepX / 0.955
3vo8 GDPCell division protein FtsZ / 0.770
2r6r GDPCell division protein FtsZ / 0.738
3zid GDPTubulin-like protein CetZ / 0.736
4b45 GSPTubulin-like protein CetZ2 / 0.696
4kwe GDPCell division protein FtsZ / 0.682
3cb2 GDPTubulin gamma-1 chain / 0.677
4iij GTPTubulin alpha-1B chain / 0.667
4u3j GTPTubulin beta chain / 0.665
5la6 GDPTubulin beta-2B chain / 0.663
4zol GTPTubulin alpha-1B chain / 0.657
5la6 GTPTubulin alpha-1B chain / 0.657