Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4ei7 | GDP | Plasmid replication protein RepX |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4ei7 | GDP | Plasmid replication protein RepX | / | 0.955 | |
| 3vo8 | GDP | Cell division protein FtsZ | / | 0.770 | |
| 2r6r | GDP | Cell division protein FtsZ | / | 0.738 | |
| 3zid | GDP | Tubulin-like protein CetZ | / | 0.736 | |
| 4b45 | GSP | Tubulin-like protein CetZ2 | / | 0.696 | |
| 4kwe | GDP | Cell division protein FtsZ | / | 0.682 | |
| 3cb2 | GDP | Tubulin gamma-1 chain | / | 0.677 | |
| 4iij | GTP | Tubulin alpha-1B chain | / | 0.667 | |
| 4u3j | GTP | Tubulin beta chain | / | 0.665 | |
| 5la6 | GDP | Tubulin beta-2B chain | / | 0.663 | |
| 4zol | GTP | Tubulin alpha-1B chain | / | 0.657 | |
| 5la6 | GTP | Tubulin alpha-1B chain | / | 0.657 |