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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ehy ADP Tetraacyldisaccharide 4'-kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ehy ADPTetraacyldisaccharide 4'-kinase / 1.227
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.699
1hwl ADP3-hydroxy-3-methylglutaryl-coenzyme A reductase 1.1.1.34 0.669
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.664
4fi1 ATPCasein kinase II subunit alpha 2.7.11.1 0.659
3hpr AP5Adenylate kinase / 0.658
3rup ADPBiotin carboxylase 6.3.4.14 0.658
4nmd FDABifunctional protein PutA / 0.657
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.655
4g36 SLULuciferin 4-monooxygenase 1.13.12.7 0.655
2ex1 C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 0.653
2b51 UTPRNA editing complex protein MP57 / 0.651