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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ee3 UDH Beta-1,4-galactosyltransferase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ee3 UDHBeta-1,4-galactosyltransferase 1 / 1.219
1yro GDUBeta-1,4-galactosyltransferase 1 / 1.002
1oqm UD2Beta-1,4-galactosyltransferase 1 / 0.961
2fyc GDUBeta-1,4-galactosyltransferase 1 2.4.1 0.961
1o23 UPGBeta-1,4-galactosyltransferase 1 / 0.873
3v0n 4GWHisto-blood group ABO system transferase / 0.692
5c47 URMHisto-blood group ABO system transferase / 0.687
5c48 URMHisto-blood group ABO system transferase / 0.686
1fr8 GDUBeta-1,4-galactosyltransferase 1 / 0.683
5c1g GDUHisto-blood group ABO system transferase / 0.683
5c3a URMHisto-blood group ABO system transferase / 0.682
3v0m 5GWHisto-blood group ABO system transferase / 0.681
4y6u UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.674
4fl2 ANPTyrosine-protein kinase SYK 2.7.10.2 0.671
5c1h GDUHisto-blood group ABO system transferase / 0.668
4y6n UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.665
3zgf IUGHisto-blood group ABO system transferase / 0.662
3vth APCCarbamoyltransferase / 0.661
4iij GTPTubulin alpha-1B chain / 0.657
1mdl SMNMandelate racemase / 0.655
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.655
4y9x UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.655
3dnt ATPSerine/threonine-protein kinase toxin HipA / 0.654
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.654
4tnp DCPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.653
4qm6 GTPMetallophosphoesterase / 0.651
2zev B71Geranylgeranyl pyrophosphate synthase / 0.650
3cly ACPFibroblast growth factor receptor 2 / 0.650