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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4eaw 0NQ Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4eaw 0NQGenome polyprotein 2.7.7.48 1.097
3cvk N34Genome polyprotein 2.7.7.48 0.816
3h59 H59Genome polyprotein 2.7.7.48 0.796
3cde N3HGenome polyprotein 2.7.7.48 0.753
3g86 T18Genome polyprotein 2.7.7.48 0.740
3e51 N35Genome polyprotein 2.7.7.48 0.738
3co9 3MSGenome polyprotein 2.7.7.48 0.727
3cwj 321Genome polyprotein 2.7.7.48 0.725
4mk8 28QGenome polyprotein 2.7.7.48 0.714
3d5m 4MSGenome polyprotein 2.7.7.48 0.713
3h2l YAKGenome polyprotein 2.7.7.48 0.712
3h98 B5PGenome polyprotein 2.7.7.48 0.707
3gyn B42Genome polyprotein 2.7.7.48 0.704
3bsa 1PDGenome polyprotein 2.7.7.48 0.684
3h5u H5UGenome polyprotein 2.7.7.48 0.684
4mka 2AYGenome polyprotein 2.7.7.48 0.678
4mkb 28VGenome polyprotein 2.7.7.48 0.670
3d28 B34Genome polyprotein 2.7.7.48 0.661
3igv B80Genome polyprotein 2.7.7.48 0.661
2giq NN2Genome polyprotein 2.7.7.48 0.657