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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4e2w JHZ Methyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4e2w JHZMethyltransferase / 1.379
3ndj JHZMethyltransferase / 1.334
4e32 DWNMethyltransferase / 1.262
4e31 JHZMethyltransferase / 1.250
4e2z JHZMethyltransferase / 1.249
4e2y JHZMethyltransferase / 1.174
4e2x TYDMethyltransferase / 1.010
1t91 GTPRas-related protein Rab-7a / 0.677
4xoi GTPTransforming protein RhoA / 0.671
1yzq GNPRas-related protein Rab-6A / 0.668
1s1c GNPTransforming protein RhoA / 0.655
1ky2 GNPGTP-binding protein YPT7 / 0.651