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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4e0h FAD Mitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.368
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.131
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.120
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.084
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.074
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.061
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.053
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.034
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.004
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.996
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.991
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.963
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.914
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.903
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.895
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.852
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.803
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.792
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.789
3td7 FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.747
3gwn FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.730
3ust FADAcMNPV orf92 / 0.728
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.702
3qzy FADFAD-linked sulfhydryl oxidase / 0.697
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.670
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 0.665
4opt FDAConserved Archaeal protein / 0.655
4opi FDAConserved Archaeal protein / 0.653