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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dz2 FK5 Peptidyl-prolyl cis-trans isomerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dz2 FK5Peptidyl-prolyl cis-trans isomerase / 1.251
2fke FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.020
3ihz FK5Peptidylprolyl isomerase / 0.996
1fkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.982
1fkj FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.974
1fkd 818Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.971
1a7x FKAPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.939
3o5r FK5Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.936
1tco FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.912
1tco FK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 3.1.3.16 0.912
1qpl 587Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.905
1qpf 858Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.892
4qt3 RAPPeptidylprolyl isomerase / 0.874
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.871
1bkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.848
4odo FK5Peptidyl-prolyl cis-trans isomerase / 0.846
1fkb RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.835
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.831
2dg3 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.817
2vn1 FK5Peptidylprolyl isomerase / 0.814
1c9h RAPPeptidyl-prolyl cis-trans isomerase FKBP1B 5.2.1.8 0.806
4lay I63Peptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 0.806
4drk I63Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.774
2dg4 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.770
4drm 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.768
1fki SB1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.759
1q6i FK5FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 5.2.1.8 0.751
1fkh SBXPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.749
1bl4 AP1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.748
2dg9 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.728
4drn 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.714