Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dve BTN Biotin transporter BioY

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dve BTNBiotin transporter BioY / 1.046
3ew2 BTNHypothetical conserved protein / 0.694
4gd9 BTNStreptavidin / 0.683
3wyq BTNStreptavidin / 0.682
1y52 BTNAvidin-related protein 4/5 / 0.681
2fhl BNIAvidin-related protein 4/5 / 0.678
2fhn BNIAvidin-related protein 4/5 / 0.678
1lcz BH7Streptavidin / 0.676
1nqm BTNStreptavidin / 0.673
1swg BTNStreptavidin / 0.669
1ndj BTNStreptavidin / 0.663
2jgs BTNAvidin / 0.662
2izi BTNStreptavidin / 0.657
1e4v AP5Adenylate kinase / 0.653
1swr BTNStreptavidin / 0.653
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 0.652
2rtf BTNStreptavidin / 0.651