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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4drp 0MD Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4drp 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 1.053
4dro 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 1.009
4drm 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.955
4drk I63Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.931
4drn 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.884
4lay I63Peptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 0.850
1fkg SB3Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.765
4jfi 1KTPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.762
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.752
1fkh SBXPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.747
1bl4 AP1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.746
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.736
2dg9 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.713
1bkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.704
1j4h SUBPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.699
1fkb RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.687
4odo FK5Peptidyl-prolyl cis-trans isomerase / 0.683
1fki SB1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.676
4qt3 RAPPeptidylprolyl isomerase / 0.676
1qpl 587Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.660
2dg4 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.651