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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dro 0MD Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dro 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 1.069
4drp 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 1.009
4drm 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.992
4drk I63Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.965
4drn 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.948
4lay I63Peptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 0.884
4jfi 1KTPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.825
1fkg SB3Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.798
1bl4 AP1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.760
1fkh SBXPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.752
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.742
2dg9 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.728
2dg4 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.693
1fkb RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.692
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.692
4qt3 RAPPeptidylprolyl isomerase / 0.690
1j4h SUBPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.686
3o5r FK5Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.677
1qpl 587Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.672
1qpf 858Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.666
1fki SB1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.663
2dg3 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.657
1c9h RAPPeptidyl-prolyl cis-trans isomerase FKBP1B 5.2.1.8 0.652