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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dri RAP Serine/threonine-protein kinase mTOR 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dri RAPSerine/threonine-protein kinase mTOR 2.7.11.1 1.683
4dri RAPPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 1.683
4drj RAPSerine/threonine-protein kinase mTOR 2.7.11.1 1.433
4drj RAPPeptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 1.433
1nsg RADPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.174
1nsg RADSerine/threonine-protein kinase mTOR 2.7.11.1 1.174
2fap RADPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.174
2fap RADSerine/threonine-protein kinase mTOR 2.7.11.1 1.174
1fap RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.148
1fap RAPSerine/threonine-protein kinase mTOR 2.7.11.1 1.148
4fap ARDPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.120
4fap ARDSerine/threonine-protein kinase mTOR 2.7.11.1 1.120
4drh RAPSerine/threonine-protein kinase mTOR 2.7.11.1 1.078
4drh RAPPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 1.078
3fap ARDPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.021
3fap ARDSerine/threonine-protein kinase mTOR 2.7.11.1 1.021
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.867
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.820
4odo FK5Peptidyl-prolyl cis-trans isomerase / 0.751
1fkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.736
1fkb RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.733
3o5r FK5Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.731
1c9h RAPPeptidyl-prolyl cis-trans isomerase FKBP1B 5.2.1.8 0.720
2dg4 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.703
2dg9 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.694