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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dpy 2P0 Mevalonate diphosphate decarboxylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dpy 2P0Mevalonate diphosphate decarboxylase / 1.151
3qt6 2P0Mevalonate diphosphate decarboxylase / 1.053
4du8 2P0Mevalonate diphosphate decarboxylase / 0.979
2xul ATPNitrogen regulatory protein P-II / 0.685
3mje NDPAmphB / 0.676
3wg6 NDPNADPH-dependent conjugated polyketone reductase C1 / 0.675
4yal 2AMNADPH--cytochrome P450 reductase / 0.672
4yau 2AMNADPH--cytochrome P450 reductase / 0.671
4yaw 2AMNADPH--cytochrome P450 reductase / 0.671
3ojx NAPNADPH--cytochrome P450 reductase / 0.665
3dk4 NDPGlutathione reductase, mitochondrial 1.8.1.7 0.664
1dfo PLGSerine hydroxymethyltransferase 2.1.2.1 0.654
1w87 NAPFerredoxin--NADP reductase 1.18.1.2 0.651