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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dpe NGH Stromelysin-1 3.4.24.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dpe NGHStromelysin-1 3.4.24.17 1.031
4ja1 NGHStromelysin-1 3.4.24.17 0.953
3kry 3KRCollagenase 3 3.4.24 0.840
1bqo N25Stromelysin-1 3.4.24.17 0.828
1d5j MM3Stromelysin-1 3.4.24.17 0.815
1d7x SPCStromelysin-1 3.4.24.17 0.810
1d8f SPIStromelysin-1 3.4.24.17 0.781
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.781
4h76 10BMacrophage metalloelastase 3.4.24.65 0.781
3oho Z79Stromelysin-1 3.4.24.17 0.773
3o2x 3O2Collagenase 3 3.4.24 0.771
1d8m BBHStromelysin-1 3.4.24.17 0.761
1b3d S27Stromelysin-1 3.4.24.17 0.757
1g05 BBHStromelysin-1 3.4.24.17 0.752
2w0d CGSMacrophage metalloelastase 3.4.24.65 0.748
1bzs BSINeutrophil collagenase 3.4.24.34 0.729
4g9l NGHStromelysin-1 3.4.24.17 0.721
3zxh E41Collagenase 3 3.4.24 0.713
1you PFDCollagenase 3 3.4.24 0.711
1g49 111Stromelysin-1 3.4.24.17 0.701
4h49 L29Macrophage metalloelastase 3.4.24.65 0.701
2yig 5ELCollagenase 3 3.4.24 0.694
1fm1 WAYCollagenase 3 3.4.24 0.682
2dw0 GM6Zinc metalloproteinase-disintegrin-like VAP2B 3.4.24 0.682
1fls WAYCollagenase 3 3.4.24 0.678
1zxc IH6Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.674
2w13 WR2Snake venom metalloproteinase BaP1 3.4.24 0.666
2ovx 4MRMatrix metalloproteinase-9 3.4.24.35 0.665
2w14 WR2Snake venom metalloproteinase BaP1 3.4.24 0.665
1ciz DPSStromelysin-1 3.4.24.17 0.663
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.653