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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dld TZG Glutamate receptor ionotropic, kainate 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dld TZGGlutamate receptor ionotropic, kainate 1 / 1.113
3tza TZGGlutamate receptor 2 / 0.884
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.821
4f3g KAIGlutamate receptor 3 / 0.815
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.806
2wky IBCGlutamate receptor ionotropic, kainate 1 / 0.788
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.787
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.784
2qs3 UBEGlutamate receptor ionotropic, kainate 1 / 0.774
3kfm KAIGlutamate receptor 4 / 0.774
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 0.747
3c34 KAIGlutamate receptor ionotropic, kainate 1 / 0.744
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.742
4f31 KAIGlutamate receptor 3 / 0.738
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.723
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.719
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.716
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.687
3ua8 08WGlutamate receptor 2 / 0.681
3rt8 CWDGlutamate receptor 3 / 0.678
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.676
3h03 UBPGlutamate receptor 2 / 0.674
3sxj SAMPutative methyltransferase / 0.665
4fkx CDPNucleoside diphosphate kinase / 0.664
3zky WT4Isopenicillin N synthase 1.21.3.1 0.662
1kia SAMGlycine N-methyltransferase 2.1.1.20 0.659
2qk8 MTXDihydrofolate reductase / 0.659
4x5g FOLDihydrofolate reductase 1.5.1.3 0.655
1q3g UDAUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.654
3t7s SAMUncharacterized protein / 0.654
2jb4 A14Isopenicillin N synthase 1.21.3.1 0.653
4itx IN5Cystathionine beta-lyase MetC 4.4.1.8 0.652