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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dlc UMP Deoxyuridine triphosphatase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dlc UMPDeoxyuridine triphosphatase, putative / 1.002
2cje DUNDUTPase / 0.842
2yay DUPDUTPase / 0.838
4dkb DUNDeoxyuridine triphosphatase, putative / 0.814
2cic DUPDUTPase / 0.738
1ci0 FMNPyridoxamine 5'-phosphate oxidase 1.4.3.5 0.657
1uwz THUCytidine deaminase 3.5.4.5 0.654