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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4djx 0KQ Beta-secretase 1 3.4.23.46

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4djx 0KQBeta-secretase 1 3.4.23.46 0.902
4djy 0KRBeta-secretase 1 3.4.23.46 0.857
4djv 0KMBeta-secretase 1 3.4.23.46 0.790
4jpc 1M6Beta-secretase 1 3.4.23.46 0.778
4jpe 1M7Beta-secretase 1 3.4.23.46 0.757
4djw 0KPBeta-secretase 1 3.4.23.46 0.752
4b1c 1B1Beta-secretase 1 3.4.23.46 0.708
4b0q GMFBeta-secretase 1 3.4.23.46 0.695
4jp9 1M5Beta-secretase 1 3.4.23.46 0.692
4b1e 6T6Beta-secretase 1 3.4.23.46 0.688
4joo 1M4Beta-secretase 1 3.4.23.46 0.685
3l5e BDWBeta-secretase 1 3.4.23.46 0.671
4acx S8ZBeta-secretase 1 3.4.23.46 0.670
4lc7 1WPBeta-secretase 1 3.4.23.46 0.670
1vaf ARRNitric oxide synthase, inducible 1.14.13.39 0.666
4l7g 1W0Beta-secretase 1 3.4.23.46 0.666
3l5d BDVBeta-secretase 1 3.4.23.46 0.665
4acu QN7Beta-secretase 1 3.4.23.46 0.664
4fuj 1U9Urokinase-type plasminogen activator 3.4.21.73 0.660
4h3j 10WBeta-secretase 1 3.4.23.46 0.659
4dju 0KKBeta-secretase 1 3.4.23.46 0.653
1sqt UI3Urokinase-type plasminogen activator 3.4.21.73 0.652