Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dij BLF E3 ubiquitin-protein ligase Mdm2 6.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dij BLFE3 ubiquitin-protein ligase Mdm2 6.3.2 1.056
1n35 CH1RNA-directed RNA polymerase lambda-3 2.7.7.48 0.744
1nmd ATPMajor actin / 0.744
2fzk CTPAspartate carbamoyltransferase regulatory chain / 0.744
2oap ANPType II secretion system protein (GspE-2) / 0.744
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.744
3cwq ADPParA family chromosome partitioning protein / 0.744
3f8r NAPNADH oxidase/thioredoxin reductase / 0.744
3fzf ATPHeat shock cognate 71 kDa protein / 0.744
3u9d ATPActin, alpha skeletal muscle / 0.744
3ypi PGHTriosephosphate isomerase 5.3.1.1 0.744
3zzn ADPL-lactate dehydrogenase / 0.744
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.744
4erf 0R3E3 ubiquitin-protein ligase Mdm2 6.3.2 0.705
4jwr 1MYE3 ubiquitin-protein ligase Mdm2 6.3.2 0.705
4jsc 1OYE3 ubiquitin-protein ligase Mdm2 6.3.2 0.699
4jrg I09E3 ubiquitin-protein ligase Mdm2 6.3.2 0.689
4ere 0R2E3 ubiquitin-protein ligase Mdm2 6.3.2 0.684
1rv1 IMZE3 ubiquitin-protein ligase Mdm2 6.3.2 0.683
1yra GDPGPN-loop GTPase PAB0955 / 0.660
2hru ADPPhosphoribosylformylglycinamidine synthase subunit PurL / 0.660
2hs4 ACPPhosphoribosylformylglycinamidine synthase subunit PurL / 0.660
2lzg 13QE3 ubiquitin-protein ligase Mdm2 6.3.2 0.660
2xtn GTPGTPase IMAP family member 2 / 0.660
3fwy ADPLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein / 0.660
3kjg ADPCO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC / 0.660
4cdg ADPBloom syndrome protein 3.6.4.12 0.660
4nxv GDPMitochondrial dynamics protein MID51 / 0.660
4o3m ADPBloom syndrome protein 3.6.4.12 0.660
4jvr 1MTE3 ubiquitin-protein ligase Mdm2 6.3.2 0.655